HL_28LN_098

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUUCA(PSU)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_098 not in the Motif Atlas

Homologous match to HL_9H3G_062

Geometric discrepancy: 0.2383

The information below is about HL_9H3G_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

28LN|1|B5|C|4416
28LN|1|B5|G|4417
28LN|1|B5|U|4418
28LN|1|B5|U|4419
28LN|1|B5|C|4420
28LN|1|B5|A|4421
28LN|1|B5|PSU|4422
28LN|1|B5|A|4423
28LN|1|B5|G|4424

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bm

Ubiquitin-60S ribosomal protein L40