HL_28LN_099

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

28LN|1|B5|G|4474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_099 not in the Motif Atlas

Homologous match to HL_9H3G_063

Geometric discrepancy: 0.1741

The information below is about HL_9H3G_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

28LN|1|B5|A|4473
28LN|1|B5|G|4474
28LN|1|B5|C|4475
28LN|1|B5|A|4476
28LN|1|B5|G|4477
28LN|1|B5|A|4478
28LN|1|B5|A|4479
28LN|1|B5|U|4480

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain Bm

Ubiquitin-60S ribosomal protein L40