HL_28UH_080

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

28UH|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UH_080 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1384

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

28UH|1|a|G|1949
28UH|1|a|G|1950
28UH|1|a|U|1951
28UH|1|a|A|1952
28UH|1|a|A|1953
28UH|1|a|G|1954
28UH|1|a|U|1955
28UH|1|a|U|1956
28UH|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

Large ribosomal subunit protein uL14