HL_28UI_070

3D structure

PDB id

28UI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

28UI|1|a|A|1614, 28UI|1|a|A|1616, 28UI|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UI_070 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0979

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

28UI|1|a|C|1612
28UI|1|a|G|1613
28UI|1|a|A|1614
28UI|1|a|C|1615
28UI|1|a|A|1616
28UI|1|a|C|1617
28UI|1|a|6MZ|1618
28UI|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain r

Large ribosomal subunit protein uL22