HL_28UJ_021

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

28UJ|1|A|U|1030

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UJ_021 not in the Motif Atlas

Geometric match to HL_9AXU_012

Geometric discrepancy: 0.3872

The information below is about HL_9AXU_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

28UJ|1|A|C|1028
28UJ|1|A|U|1029
28UJ|1|A|U|1030
28UJ|1|A|C|1031
28UJ|1|A|G|1032
28UJ|1|A|G|1033

Current chains

Chain A

16S rRNA

Nearby chains