HL_28UJ_040

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

28UJ|1|a|A|196, 28UJ|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UJ_040 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0928

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

28UJ|1|a|G|194
28UJ|1|a|A|195
28UJ|1|a|A|196
28UJ|1|a|A|197
28UJ|1|a|C|198
28UJ|1|a|A|199
28UJ|1|a|U|200
28UJ|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28