HL_28UJ_042

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UJ_042 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.0849

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.4

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

28UJ|1|a|C|246
28UJ|1|a|G|247
28UJ|1|a|G|248
28UJ|1|a|C|249
28UJ|1|a|G|250
28UJ|1|a|A|251
28UJ|1|a|G|252

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain Z

Transfer RNA; tRNA

Chain k

Large ribosomal subunit protein uL15