HL_28UJ_059

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UJ_059 not in the Motif Atlas

Geometric match to HL_8B0X_056

Geometric discrepancy: 0.374

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

28UJ|1|a|C|885
28UJ|1|a|A|886
28UJ|1|a|U|887
28UJ|1|a|C|888
28UJ|1|a|C|889
28UJ|1|a|C|890
28UJ|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS19

Chain f

Large ribosomal subunit protein uL5