HL_28UJ_100
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 28UJ|1|b|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28UJ_100 not in the Motif Atlas
- Geometric match to HL_8B0X_102
- Geometric discrepancy: 0.1786
- The information below is about HL_8B0X_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.4
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
28UJ|1|b|A|34
28UJ|1|b|C|35
28UJ|1|b|C|36
28UJ|1|b|C|37
28UJ|1|b|C|38
28UJ|1|b|A|39
28UJ|1|b|U|40
28UJ|1|b|G|41
28UJ|1|b|C|42
28UJ|1|b|C|43
28UJ|1|b|G|44
28UJ|1|b|A|45
28UJ|1|b|A|46
28UJ|1|b|C|47
28UJ|1|b|U|48
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL31
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
Coloring options: