HL_28UK_067

3D structure

PDB id

28UK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

28UK|1|a|A|1453, 28UK|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UK_067 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0424

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

28UK|1|a|C|1451
28UK|1|a|G|1452
28UK|1|a|A|1453
28UK|1|a|C|1454
28UK|1|a|G|1455
28UK|1|a|G|1456
28UK|1|a|U|1457
28UK|1|a|U|1458
28UK|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17