HL_28UL_039
3D structure
- PDB id
- 28UL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28UL_039 not in the Motif Atlas
- Homologous match to HL_8B0X_037
- Geometric discrepancy: 0.0406
- The information below is about HL_8B0X_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50765.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
28UL|1|a|U|158
28UL|1|a|G|159
28UL|1|a|A|160
28UL|1|a|A|161
28UL|1|a|U|162
28UL|1|a|C|163
28UL|1|a|C|164
28UL|1|a|A|165
28UL|1|a|U|166
28UL|1|a|A|167
28UL|1|a|G|168
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: