HL_28UL_040

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

28UL|1|a|A|196, 28UL|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UL_040 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0866

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

28UL|1|a|G|194
28UL|1|a|A|195
28UL|1|a|A|196
28UL|1|a|A|197
28UL|1|a|C|198
28UL|1|a|A|199
28UL|1|a|U|200
28UL|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28