HL_28UL_047

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

28UL|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UL_047 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.104

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

28UL|1|a|G|410
28UL|1|a|G|411
28UL|1|a|A|412
28UL|1|a|C|413
28UL|1|a|C|414
28UL|1|a|A|415
28UL|1|a|U|416
28UL|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains