HL_28UL_074

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

28UL|1|a|U|1729, 28UL|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UL_074 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3304

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

28UL|1|a|C|1727
28UL|1|a|C|1728
28UL|1|a|U|1729
28UL|1|a|C|1730
28UL|1|a|G|1731
28UL|1|a|C|1732
28UL|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains