HL_28UL_079

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

28UL|1|a|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UL_079 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1363

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.3

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

28UL|1|a|G|1910
28UL|1|a|PSU|1911
28UL|1|a|A|1912
28UL|1|a|A|1913
28UL|1|a|C|1914
28UL|1|a|3TD|1915
28UL|1|a|A|1916
28UL|1|a|PSU|1917
28UL|1|a|A|1918
28UL|1|a|A|1919
28UL|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain X

mRNA

Chain Y

Transfer RNA; tRNA