HL_28UM_039

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

28UM|1|a|A|196, 28UM|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UM_039 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0933

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

28UM|1|a|G|194
28UM|1|a|A|195
28UM|1|a|A|196
28UM|1|a|A|197
28UM|1|a|C|198
28UM|1|a|A|199
28UM|1|a|U|200
28UM|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28