HL_28UM_066

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

28UM|1|a|A|1453, 28UM|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UM_066 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0357

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

28UM|1|a|C|1451
28UM|1|a|G|1452
28UM|1|a|A|1453
28UM|1|a|C|1454
28UM|1|a|G|1455
28UM|1|a|G|1456
28UM|1|a|U|1457
28UM|1|a|U|1458
28UM|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17