HL_28UM_079
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 28UM|1|a|U|1955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28UM_079 not in the Motif Atlas
- Homologous match to HL_7A0S_048
- Geometric discrepancy: 0.1114
- The information below is about HL_7A0S_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33350.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
28UM|1|a|G|1949
28UM|1|a|G|1950
28UM|1|a|U|1951
28UM|1|a|A|1952
28UM|1|a|A|1953
28UM|1|a|G|1954
28UM|1|a|U|1955
28UM|1|a|U|1956
28UM|1|a|C|1957
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: