HL_28UM_089

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

28UM|1|a|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UM_089 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2277

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.3

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

28UM|1|a|A|2471
28UM|1|a|G|2472
28UM|1|a|U|2473
28UM|1|a|U|2474
28UM|1|a|C|2475
28UM|1|a|A|2476
28UM|1|a|U|2477
28UM|1|a|A|2478
28UM|1|a|U|2479

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain Y

Transfer RNA; tRNA

Chain g

Large ribosomal subunit protein uL6