HL_28UN_042

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UN_042 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.093

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.4

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

28UN|1|a|C|246
28UN|1|a|G|247
28UN|1|a|G|248
28UN|1|a|C|249
28UN|1|a|G|250
28UN|1|a|A|251
28UN|1|a|G|252

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain Z

Transfer RNA; tRNA

Chain k

Large ribosomal subunit protein uL15