HL_28ZX_001

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

28ZX|1|G|C|17, 28ZX|1|G|G|18, 28ZX|1|G|G|19, 28ZX|1|G|A|20, 28ZX|1|G|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28ZX_001 not in the Motif Atlas

Homologous match to HL_7UQ6_001

Geometric discrepancy: 0.1639

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

28ZX|1|G|C|14
28ZX|1|G|A|15
28ZX|1|G|G|16
28ZX|1|G|C|17
28ZX|1|G|G|18
28ZX|1|G|G|19
28ZX|1|G|A|20
28ZX|1|G|A|21
28ZX|1|G|G|22

Current chains

Chain G

initiator tRNA

Nearby chains

Chain D

Eukaryotic translation initiation factor 2 subunit 1