RNA 3D Hub //

28ZX Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_28ZX_0011/G/14:22tRNA D-loop
homologous
HL_7UQ6_001
HL_20490.1
HL_28ZX_0021/G/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_81376.4
HL_28ZX_0031/G/53:61T-loop with 2 stacked bulged bases
homologous
HL_1U0B_003
HL_33597.6
HL_28ZX_0041/S2/7:17No text annotation
HL_28ZX_0051/S2/69:80No text annotation
HL_28ZX_0061/S2/156:162No text annotation
HL_28ZX_0071/S2/196:204No text annotation
HL_28ZX_0081/S2/288:295No text annotation
HL_28ZX_0091/S2/322:329No text annotation
HL_28ZX_0101/S2/377:387No text annotation
HL_28ZX_0111/S2/416:421No text annotation
HL_28ZX_0121/S2/441:452No text annotation
HL_28ZX_0131/S2/462:467No text annotation
HL_28ZX_0141/S2/498:504No text annotation
HL_28ZX_0161/S2/569:581No text annotation
HL_28ZX_0171/S2/618:623No text annotation
HL_28ZX_0181/S2/820:828No text annotation
HL_28ZX_0191/S2/833:841No text annotation
HL_28ZX_0211/S2/957:966No text annotation
HL_28ZX_0221/S2/994:999No text annotation
HL_28ZX_0231/S2/1054:1064No text annotation
HL_28ZX_0241/S2/1113:1120No text annotation
HL_28ZX_0251/S2/1141:1146No text annotation
HL_28ZX_0261/S2/1178:1183No text annotation
HL_28ZX_0271/S2/1245:1254No text annotation
HL_28ZX_0281/S2/1294:1305No text annotation
HL_28ZX_0291/S2/1353:1358No text annotation
HL_28ZX_0301/S2/1366:1373No text annotation
HL_28ZX_0311/S2/1416:1424No text annotation
HL_28ZX_0321/S2/1460:1466No text annotation
HL_28ZX_0331/S2/1565:1570No text annotation
HL_28ZX_0341/S2/1614:1625No text annotation
HL_28ZX_0351/S2/1658:1666No text annotation
HL_28ZX_0361/S2/1757:1773No text annotation
HL_28ZX_0371/S2/1847:1852No text annotation

Problematic loops

#loop idProblemSequence
HL_28ZX_015No text annotation
HL_28ZX_020No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_28ZX_0011/S2/23:25,
1/S2/649:651		No text annotation
IL_28ZX_0021/S2/34:36,
1/S2/519:521		No text annotation
IL_28ZX_0031/S2/37:40,
1/S2/514:518		No text annotation
IL_28ZX_0041/S2/41:47,
1/S2/479:481		No text annotation
IL_28ZX_0051/S2/49:51,
1/S2/476:477		No text annotation
IL_28ZX_0061/S2/57:62,
1/S2/86:88		No text annotation
IL_28ZX_0071/S2/63:68,
1/S2/81:85		No text annotation
IL_28ZX_0081/S2/108:110,
1/S2/351:353		No text annotation
IL_28ZX_0091/S2/110:112,
1/S2/349:351		No text annotation
IL_28ZX_0101/S2/112:115,
1/S2/348:349		No text annotation
IL_28ZX_0111/S2/116:121,
1/S2/343:347		No text annotation
IL_28ZX_0121/S2/130:144,
1/S2/175:182		No text annotation
IL_28ZX_0131/S2/145:151,
1/S2/167:174		No text annotation
IL_28ZX_0141/S2/152:154,
1/S2/164:166		No text annotation
IL_28ZX_0151/S2/188:192,
1/S2/207:211		No text annotation
IL_28ZX_0161/S2/194:196,
1/S2/204:205		No text annotation
IL_28ZX_0171/S2/216:219,
1/S2/302:309		No text annotation
IL_28ZX_0181/S2/312:314,
1/S2/336:337		No text annotation
IL_28ZX_0191/S2/317:319,
1/S2/332:333		No text annotation
IL_28ZX_0201/S2/359:364,
1/S2/396:403		No text annotation
IL_28ZX_0211/S2/366:371,
1/S2/393:394		No text annotation
IL_28ZX_0221/S2/411:413,
1/S2/424:429		No text annotation
IL_28ZX_0231/S2/437:439,
1/S2/454:456		No text annotation
IL_28ZX_0241/S2/459:461,
1/S2/468:470		No text annotation
IL_28ZX_0251/S2/487:489,
1/S2/511:512		No text annotation
IL_28ZX_0261/S2/491:495,
1/S2/508:509		No text annotation
IL_28ZX_0271/S2/495:496,
1/S2/506:508		No text annotation
IL_28ZX_0281/S2/528:532,
1/S2/552:557		No text annotation
IL_28ZX_0291/S2/532:534,
1/S2/549:552		No text annotation
IL_28ZX_0301/S2/534:539,
1/S2/544:549		No text annotation
IL_28ZX_0311/S2/563:565,
1/S2/585:592		No text annotation
IL_28ZX_0321/S2/566:569,
1/S2/581:584		No text annotation
IL_28ZX_0331/S2/599:606,
1/S2/636:637		No text annotation
IL_28ZX_0341/S2/606:608,
1/S2/635:636		No text annotation
IL_28ZX_0351/S2/611:617,
1/S2/624:632		No text annotation
IL_28ZX_0361/S2/663:665,
1/S2/1162:1164		No text annotation
IL_28ZX_0371/S2/665:671,
1/S2/1161:1162		No text annotation
IL_28ZX_0381/S2/673:675,
1/S2/1030:1032		No text annotation
IL_28ZX_0391/S2/676:680,
1/S2/1025:1029		No text annotation
IL_28ZX_0401/S2/802:803,
1/S2/860:863		No text annotation
IL_28ZX_0411/S2/805:807,
1/S2/856:858		No text annotation
IL_28ZX_0421/S2/807:815,
1/S2/849:856		No text annotation
IL_28ZX_0431/S2/874:876,
1/S2/910:912		No text annotation
IL_28ZX_0441/S2/877:879,
1/S2/907:909		No text annotation
IL_28ZX_0451/S2/922:923,
1/S2/1019:1022		No text annotation
IL_28ZX_0461/S2/925:927,
1/S2/1014:1017		No text annotation
IL_28ZX_0471/S2/928:931,
1/S2/1010:1013		No text annotation
IL_28ZX_0481/S2/931:935,
1/S2/1007:1010		No text annotation
IL_28ZX_0491/S2/942:945,
1/S2/981:984		No text annotation
IL_28ZX_0501/S2/952:956,
1/S2/967:974		No text annotation
IL_28ZX_0511/S2/1042:1047,
1/S2/1071:1073		No text annotation
IL_28ZX_0521/S2/1047:1051,
1/S2/1067:1071		No text annotation
IL_28ZX_0531/S2/1091:1093,
1/S2/1152:1158		No text annotation
IL_28ZX_0541/S2/1098:1101,
1/S2/1131:1134		No text annotation
IL_28ZX_0551/S2/1101:1103,
1/S2/1129:1131		No text annotation
IL_28ZX_0561/S2/1108:1110,
1/S2/1123:1124		No text annotation
IL_28ZX_0571/S2/1168:1175,
1/S2/1186:1191		No text annotation
IL_28ZX_0581/S2/1203:1204,
1/S2/1694:1696		No text annotation
IL_28ZX_0591/S2/1206:1208,
1/S2/1691:1692		No text annotation
IL_28ZX_0601/S2/1214:1217,
1/S2/1681:1685		No text annotation
IL_28ZX_0611/S2/1230:1232,
1/S2/1526:1528		No text annotation
IL_28ZX_0621/S2/1235:1236,
1/S2/1521:1523		No text annotation
IL_28ZX_0631/S2/1270:1272,
1/S2/1510:1512		No text annotation
IL_28ZX_0641/S2/1282:1290,
1/S2/1308:1315		No text annotation
IL_28ZX_0651/S2/1291:1293,
1/S2/1306:1307		No text annotation
IL_28ZX_0661/S2/1325:1327,
1/S2/1502:1503		No text annotation
IL_28ZX_0671/S2/1329:1333,
1/S2/1498:1500		No text annotation
IL_28ZX_0681/S2/1329:1335,
1/S2/1492:1500		No text annotation
IL_28ZX_0691/S2/1333:1335,
1/S2/1492:1498		No text annotation
IL_28ZX_0701/S2/1337:1338,
1/S2/1488:1490		No text annotation
IL_28ZX_0711/S2/1347:1349,
1/S2/1380:1382		No text annotation
IL_28ZX_0721/S2/1363:1365,
1/S2/1374:1375		No text annotation
IL_28ZX_0731/S2/1395:1399,
1/S2/1447:1450		No text annotation
IL_28ZX_0741/S2/1402:1405,
1/S2/1441:1444		No text annotation
IL_28ZX_0751/S2/1408:1409,
1/S2/1432:1438		No text annotation
IL_28ZX_0761/S2/1412:1413,
1/S2/1427:1429		No text annotation
IL_28ZX_0771/S2/1537:1539,
1/S2/1594:1596		No text annotation
IL_28ZX_0781/S2/1541:1550,
1/S2/1582:1592		No text annotation
IL_28ZX_0791/S2/1550:1558,
1/S2/1577:1582		No text annotation
IL_28ZX_0801/S2/1560:1562,
1/S2/1573:1575		No text annotation
IL_28ZX_0811/S2/1604:1610,
1/S2/1629:1635		No text annotation
IL_28ZX_0821/S2/1700:1702,
1/S2/1833:1836		No text annotation
IL_28ZX_0831/S2/1702:1705,
1/S2/1829:1833		No text annotation
IL_28ZX_0841/S2/1706:1708,
1/S2/1826:1828		No text annotation
IL_28ZX_0851/S2/1708:1711,
1/S2/1822:1826		No text annotation
IL_28ZX_0861/S2/1714:1716,
1/S2/1817:1819		No text annotation
IL_28ZX_0871/S2/1717:1720,
1/S2/1813:1816		No text annotation
IL_28ZX_0891/S2/1729:1731,
1/S2/1803:1805		No text annotation
IL_28ZX_0901/S2/1733:1736,
1/S2/1798:1801		No text annotation
IL_28ZX_0911/S2/1739:1741,
1/S2/1793:1795		No text annotation
IL_28ZX_0921/S2/1742:1746,
1/S2/1788:1792		No text annotation

Problematic loops

#loop idProblemSequence
IL_28ZX_088No text annotation
IL_28ZX_093No text annotation
IL_28ZX_094No text annotation
IL_28ZX_095No text annotation
IL_28ZX_096No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_28ZX_0011/S2/40:41,
1/S2/481:487,
1/S2/512:514		No text annotation
J3_28ZX_0021/S2/40:47,
1/S2/479:487,
1/S2/512:514		No text annotation
J3_28ZX_0031/S2/682:685,
1/S2/917:922,
1/S2/1022:1023		No text annotation
J3_28ZX_0041/S2/682:685,
1/S2/917:923,
1/S2/1019:1023		No text annotation
J3_28ZX_0051/S2/816:819,
1/S2/829:831,
1/S2/843:848		No text annotation
J3_28ZX_0061/S2/938:941,
1/S2/985:993,
1/S2/1000:1004		No text annotation
J3_28ZX_0071/S2/1094:1096,
1/S2/1136:1140,
1/S2/1147:1151		No text annotation
J3_28ZX_0081/S2/1218:1221,
1/S2/1645:1651,
1/S2/1673:1680		No text annotation
J3_28ZX_0091/S2/1225:1228,
1/S2/1530:1532,
1/S2/1638:1641		No text annotation
J3_28ZX_0101/S2/1237:1244,
1/S2/1255:1266,
1/S2/1516:1520		No text annotation
J3_28ZX_0111/S2/1272:1277,
1/S2/1320:1324,
1/S2/1504:1510		No text annotation
J3_28ZX_0121/S2/1340:1345,
1/S2/1384:1389,
1/S2/1481:1486		No text annotation
J3_28ZX_0131/S2/1350:1351,
1/S2/1360:1363,
1/S2/1375:1379		No text annotation
J3_28ZX_0141/S2/1391:1395,
1/S2/1450:1456,
1/S2/1470:1479		No text annotation
J3_28ZX_0151/S2/1532:1536,
1/S2/1597:1604,
1/S2/1635:1638		No text annotation
J4_28ZX_0011/G/8:12,
1/G/24:27,
1/G/43:49,
1/G/65:66		No text annotation
J4_28ZX_0021/S2/98:106,
1/S2/355:357,
1/S2/405:409,
1/S2/431:432		No text annotation
J4_28ZX_0031/S2/671:673,
1/S2/1032:1037,
1/S2/1078:1089,
1/S2/1160:1161		No text annotation
J5_28ZX_0011/S2/30:34,
1/S2/521:527,
1/S2/558:563,
1/S2/592:595,
1/S2/641:644		No text annotation
J5_28ZX_0021/S2/30:34,
1/S2/521:527,
1/S2/558:565,
1/S2/585:595,
1/S2/641:644		No text annotation
J5_28ZX_0031/S2/53:56,
1/S2/89:96,
1/S2/434:436,
1/S2/457:459,
1/S2/470:474		No text annotation
J5_28ZX_0041/S2/123:129,
1/S2/183:185,
1/S2/214:215,
1/S2/310:312,
1/S2/337:341		No text annotation

Problematic loops

No problematic loops


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