28ZX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_28ZX_001 | 1/G/14:22 | tRNA D-loop | homologous HL_7UQ6_001 HL_20490.1 | |
| HL_28ZX_002 | 1/G/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.5 | |
| HL_28ZX_003 | 1/G/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_33597.8 | |
| HL_28ZX_004 | 1/S2/7:17 | No text annotation | homologous HL_9H3G_079 HL_73535.4 | |
| HL_28ZX_005 | 1/S2/69:80 | No text annotation | ||
| HL_28ZX_006 | 1/S2/156:162 | No text annotation | homologous HL_9PN5_079 HL_34789.7 | |
| HL_28ZX_007 | 1/S2/196:204 | No text annotation | homologous HL_9H3G_082 NA | |
| HL_28ZX_008 | 1/S2/288:295 | No text annotation | homologous HL_9PN5_082 HL_67772.4 | |
| HL_28ZX_009 | 1/S2/322:329 | No text annotation | ||
| HL_28ZX_010 | 1/S2/377:387 | No text annotation | geometric HL_8GLP_091 HL_50525.1 | |
| HL_28ZX_011 | 1/S2/416:421 | No text annotation | homologous HL_9PN5_085 HL_34789.7 | |
| HL_28ZX_012 | 1/S2/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_28ZX_013 | 1/S2/462:467 | No text annotation | homologous HL_9H3G_087 HL_61337.7 | |
| HL_28ZX_014 | 1/S2/498:504 | No text annotation | homologous HL_9PN5_088 HL_25795.2 | |
| HL_28ZX_016 | 1/S2/569:581 | No text annotation | homologous HL_9PN5_090 HL_68749.4 | |
| HL_28ZX_017 | 1/S2/618:623 | No text annotation | homologous HL_9PN5_091 HL_34789.7 | |
| HL_28ZX_018 | 1/S2/820:828 | No text annotation | homologous HL_9PN5_092 HL_11974.5 | |
| HL_28ZX_019 | 1/S2/833:841 | No text annotation | ||
| HL_28ZX_021 | 1/S2/957:966 | No text annotation | homologous HL_9H3G_093 HL_38491.5 | |
| HL_28ZX_022 | 1/S2/994:999 | No text annotation | homologous HL_9H3G_094 HL_34789.7 | |
| HL_28ZX_023 | 1/S2/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_28ZX_024 | 1/S2/1113:1120 | No text annotation | ||
| HL_28ZX_025 | 1/S2/1141:1146 | No text annotation | homologous HL_9H3G_097 HL_34789.7 | |
| HL_28ZX_026 | 1/S2/1178:1183 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_28ZX_027 | 1/S2/1245:1254 | No text annotation | homologous HL_9H3G_099 HL_97521.4 | |
| HL_28ZX_028 | 1/S2/1294:1305 | No text annotation | geometric HL_4TUE_223 HL_38491.5 | |
| HL_28ZX_029 | 1/S2/1353:1358 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_28ZX_030 | 1/S2/1366:1373 | No text annotation | homologous HL_9PN5_104 HL_63894.5 | |
| HL_28ZX_031 | 1/S2/1416:1424 | T-loop related | geometric HL_3IVK_005 HL_67772.4 | |
| HL_28ZX_032 | 1/S2/1460:1466 | No text annotation | geometric HL_9H3G_104 HL_34789.7 | |
| HL_28ZX_033 | 1/S2/1565:1570 | No text annotation | homologous HL_9H3G_105 HL_34789.7 | |
| HL_28ZX_034 | 1/S2/1614:1625 | No text annotation | homologous HL_9H3G_106 HL_50951.4 | |
| HL_28ZX_035 | 1/S2/1658:1666 | No text annotation | homologous HL_9H3G_107 HL_25307.3 | |
| HL_28ZX_036 | 1/S2/1757:1773 | No text annotation | ||
| HL_28ZX_037 | 1/S2/1847:1852 | No text annotation | homologous HL_9H3G_108 HL_34789.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_28ZX_015 | No text annotation | ||
| HL_28ZX_020 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_28ZX_001 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.7 | |
| IL_28ZX_002 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_9PN5_143 IL_01003.7 | |
| IL_28ZX_003 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_8GLP_190 IL_58355.5 | |
| IL_28ZX_004 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_8CRE_393 IL_88082.5 | |
| IL_28ZX_005 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_9PN5_146 IL_26092.1 | |
| IL_28ZX_006 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_9PN5_147 IL_61299.9 | |
| IL_28ZX_007 | 1/S2/63:68, 1/S2/81:85 | No text annotation | homologous IL_9H3G_161 IL_21667.4 | |
| IL_28ZX_008 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_8CRE_448 IL_01003.7 | |
| IL_28ZX_009 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_8GLP_197 IL_01003.7 | |
| IL_28ZX_010 | 1/S2/112:115, 1/S2/348:349 | No text annotation | homologous IL_9H3G_163 IL_71421.6 | |
| IL_28ZX_011 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_9PN5_151 IL_31545.4 | |
| IL_28ZX_012 | 1/S2/130:144, 1/S2/175:182 | No text annotation | ||
| IL_28ZX_013 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_28ZX_014 | 1/S2/152:154, 1/S2/164:166 | Isolated cWH basepair | homologous IL_9PN5_153 IL_10892.5 | |
| IL_28ZX_015 | 1/S2/188:192, 1/S2/207:211 | No text annotation | geometric IL_8GLP_204 IL_87767.5 | |
| IL_28ZX_016 | 1/S2/194:196, 1/S2/204:205 | Single stack bend | geometric IL_4V9F_081 IL_15011.6 | |
| IL_28ZX_017 | 1/S2/216:219, 1/S2/302:309 | No text annotation | ||
| IL_28ZX_018 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | homologous IL_9H3G_171 IL_14190.5 | |
| IL_28ZX_019 | 1/S2/317:319, 1/S2/332:333 | Single stack bend | geometric IL_9PN5_136 IL_15011.6 | |
| IL_28ZX_020 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_28ZX_021 | 1/S2/366:371, 1/S2/393:394 | No text annotation | ||
| IL_28ZX_022 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_9H3G_175 IL_93336.4 | |
| IL_28ZX_023 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.5 | |
| IL_28ZX_024 | 1/S2/459:461, 1/S2/468:470 | Isolated non-canonical cWW pair | homologous IL_9H3G_177 IL_19025.1 | |
| IL_28ZX_025 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_9PN5_164 IL_97561.8 | |
| IL_28ZX_026 | 1/S2/491:495, 1/S2/508:509 | No text annotation | homologous IL_9PN5_165 IL_26900.4 | |
| IL_28ZX_027 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | homologous IL_9H3G_180 IL_28408.5 | |
| IL_28ZX_028 | 1/S2/528:532, 1/S2/552:557 | No text annotation | ||
| IL_28ZX_029 | 1/S2/532:534, 1/S2/549:552 | No text annotation | geometric IL_9M86_006 IL_32983.4 | |
| IL_28ZX_030 | 1/S2/534:539, 1/S2/544:549 | No text annotation | ||
| IL_28ZX_031 | 1/S2/563:565, 1/S2/585:592 | No text annotation | homologous IL_9H3G_182 IL_02511.3 | |
| IL_28ZX_032 | 1/S2/566:569, 1/S2/581:584 | Tandem non-canonical cWW pairs | geometric IL_8GLP_220 IL_71194.5 | |
| IL_28ZX_033 | 1/S2/599:606, 1/S2/636:637 | No text annotation | homologous IL_9PN5_171 IL_11411.4 | |
| IL_28ZX_034 | 1/S2/606:608, 1/S2/635:636 | Single bulged U | homologous IL_9PN5_172 IL_97561.8 | |
| IL_28ZX_035 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related | homologous IL_9PN5_173 IL_52042.4 | |
| IL_28ZX_036 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_19025.1 | |
| IL_28ZX_037 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_9H3G_189 IL_20847.4 | |
| IL_28ZX_038 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_28ZX_039 | 1/S2/676:680, 1/S2/1025:1029 | No text annotation | homologous IL_9H3G_191 IL_05821.4 | |
| IL_28ZX_040 | 1/S2/802:803, 1/S2/860:863 | No text annotation | homologous IL_9H3G_192 IL_73108.5 | |
| IL_28ZX_041 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_9PN5_179 IL_71625.6 | |
| IL_28ZX_042 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_9H3G_194 IL_59049.5 | |
| IL_28ZX_043 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_8GLP_233 IL_01003.7 | |
| IL_28ZX_044 | 1/S2/877:879, 1/S2/907:909 | No text annotation | homologous IL_9H3G_195 NA | |
| IL_28ZX_045 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8GLP_235 IL_74641.5 | |
| IL_28ZX_046 | 1/S2/925:927, 1/S2/1014:1017 | Isolated non-canonical cWW pair | homologous IL_9PN5_183 IL_01003.7 | |
| IL_28ZX_047 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9PN5_184 IL_15225.5 | |
| IL_28ZX_048 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_28ZX_049 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_28ZX_050 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_28ZX_051 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | homologous IL_9H3G_203 IL_31690.2 | |
| IL_28ZX_052 | 1/S2/1047:1051, 1/S2/1067:1071 | No text annotation | homologous IL_9PN5_190 IL_05821.4 | |
| IL_28ZX_053 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_28ZX_054 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.5 | |
| IL_28ZX_055 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated cWH basepair | geometric IL_8GLP_245 IL_10892.5 | |
| IL_28ZX_056 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_8GLP_246 IL_26092.1 | |
| IL_28ZX_057 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_28ZX_058 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_9H3G_210 IL_14190.5 | |
| IL_28ZX_059 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_9PN5_196 IL_28408.5 | |
| IL_28ZX_060 | 1/S2/1214:1217, 1/S2/1681:1685 | No text annotation | homologous IL_9H3G_212 IL_63596.15 | |
| IL_28ZX_061 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_9H3G_213 IL_01003.7 | |
| IL_28ZX_062 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_9H3G_214 IL_37129.1 | |
| IL_28ZX_063 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.7 | |
| IL_28ZX_064 | 1/S2/1282:1290, 1/S2/1308:1315 | No text annotation | ||
| IL_28ZX_065 | 1/S2/1291:1293, 1/S2/1306:1307 | No text annotation | ||
| IL_28ZX_066 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_9H3G_218 IL_97561.8 | |
| IL_28ZX_067 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | geometric IL_8GLP_259 IL_82453.4 | |
| IL_28ZX_068 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | homologous IL_9H3G_220 NA | |
| IL_28ZX_069 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_28ZX_070 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_9H3G_222 IL_14190.5 | |
| IL_28ZX_071 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_28ZX_072 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_9H3G_224 IL_37129.1 | |
| IL_28ZX_073 | 1/S2/1395:1399, 1/S2/1447:1450 | No text annotation | geometric IL_8GLP_337 IL_37443.2 | |
| IL_28ZX_074 | 1/S2/1402:1405, 1/S2/1441:1444 | No text annotation | homologous IL_9H3G_226 IL_78800.5 | |
| IL_28ZX_075 | 1/S2/1408:1409, 1/S2/1432:1438 | No text annotation | ||
| IL_28ZX_076 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_8GLP_268 IL_28408.5 | |
| IL_28ZX_077 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_8GLP_270 IL_71625.6 | |
| IL_28ZX_078 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_28ZX_079 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_28ZX_080 | 1/S2/1560:1562, 1/S2/1573:1575 | No text annotation | homologous IL_9H3G_231 IL_81485.1 | |
| IL_28ZX_081 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | ||
| IL_28ZX_082 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_28ZX_083 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_9H3G_234 IL_25873.5 | |
| IL_28ZX_084 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.7 | |
| IL_28ZX_085 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | homologous IL_9SUM_219 IL_26271.1 | |
| IL_28ZX_086 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_9H3G_237 IL_01003.7 | |
| IL_28ZX_087 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_9H3G_238 IL_58355.5 | |
| IL_28ZX_089 | 1/S2/1729:1731, 1/S2/1803:1805 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_28ZX_090 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_9H3G_241 IL_58355.5 | |
| IL_28ZX_091 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_8GLP_283 IL_01003.7 | |
| IL_28ZX_092 | 1/S2/1742:1746, 1/S2/1788:1792 | No text annotation | homologous IL_9PN5_231 IL_15190.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_28ZX_088 | Single bulged U | ||
| IL_28ZX_093 | No text annotation | ||
| IL_28ZX_094 | No text annotation | ||
| IL_28ZX_095 | No text annotation | ||
| IL_28ZX_096 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_28ZX_001 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_8GLP_040 J3_58657.4 | |
| J3_28ZX_002 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_9H3G_029 J3_63856.4 | |
| J3_28ZX_003 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_28ZX_004 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_28ZX_005 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_9H3G_032 J3_97642.5 | |
| J3_28ZX_006 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_28ZX_007 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | homologous J3_9H3G_034 NA | |
| J3_28ZX_008 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_9H3G_035 J3_85722.4 | |
| J3_28ZX_009 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_9H3G_036 J3_44359.4 | |
| J3_28ZX_010 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_9PN5_037 J3_88451.4 | |
| J3_28ZX_011 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_28ZX_012 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_9H3G_039 NA | |
| J3_28ZX_013 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_9PN5_040 J3_76043.7 | |
| J3_28ZX_014 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_28ZX_015 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_9PN5_043 J3_03192.4 | |
| J4_28ZX_001 | 1/G/8:12, 1/G/24:27, 1/G/43:49, 1/G/65:66 | No text annotation | ||
| J4_28ZX_002 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_9H3G_013 J4_15241.5 | |
| J4_28ZX_003 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_9H3G_014 J4_14595.4 | |
| J5_28ZX_001 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_28ZX_002 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_28ZX_003 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_9H3G_009 J5_58574.4 | |
| J5_28ZX_004 | 1/S2/123:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:341 | No text annotation |
Problematic loops
No problematic loops
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