HL_28ZX_020

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

28ZX|1|S2|U|889, 28ZX|1|S2|G|891, 28ZX|1|S2|U|892, 28ZX|1|S2|U|896, 28ZX|1|S2|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZX|1|S2|C|884
28ZX|1|S2|U|885
28ZX|1|S2|A|886
28ZX|1|S2|U|887
28ZX|1|S2|U|888
28ZX|1|S2|U|889
28ZX|1|S2|U|890
28ZX|1|S2|G|891
28ZX|1|S2|U|892
28ZX|1|S2|U|893
28ZX|1|S2|G|894
28ZX|1|S2|G|895
28ZX|1|S2|U|896
28ZX|1|S2|U|897
28ZX|1|S2|U|898
28ZX|1|S2|U|899
28ZX|1|S2|C|900
28ZX|1|S2|G|901
28ZX|1|S2|G|902

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SL

Small ribosomal subunit protein uS17