HL_28ZX_031

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

28ZX|1|S2|G|1420, 28ZX|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28ZX_031 not in the Motif Atlas

Geometric match to HL_3IVK_005

Geometric discrepancy: 0.3533

The information below is about HL_3IVK_005

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

28ZX|1|S2|C|1416
28ZX|1|S2|C|1417
28ZX|1|S2|C|1418
28ZX|1|S2|C|1419
28ZX|1|S2|G|1420
28ZX|1|S2|A|1421
28ZX|1|S2|G|1422
28ZX|1|S2|C|1423
28ZX|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

Small ribosomal subunit protein eS19