HL_28ZX_036

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGGUCGGCCCACGGCC

Length

17 nucleotides

Bulged bases

28ZX|1|S2|G|1759, 28ZX|1|S2|G|1760, 28ZX|1|S2|U|1761, 28ZX|1|S2|C|1762, 28ZX|1|S2|G|1763, 28ZX|1|S2|G|1764, 28ZX|1|S2|C|1765, 28ZX|1|S2|C|1766, 28ZX|1|S2|C|1767, 28ZX|1|S2|A|1768, 28ZX|1|S2|C|1769, 28ZX|1|S2|G|1770, 28ZX|1|S2|C|1772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZX|1|S2|G|1757
28ZX|1|S2|G|1758
28ZX|1|S2|G|1759
28ZX|1|S2|G|1760
28ZX|1|S2|U|1761
28ZX|1|S2|C|1762
28ZX|1|S2|G|1763
28ZX|1|S2|G|1764
28ZX|1|S2|C|1765
28ZX|1|S2|C|1766
28ZX|1|S2|C|1767
28ZX|1|S2|A|1768
28ZX|1|S2|C|1769
28ZX|1|S2|G|1770
28ZX|1|S2|G|1771
28ZX|1|S2|C|1772
28ZX|1|S2|C|1773

Current chains

Chain S2

18S rRNA

Nearby chains