HL_2AAR_004

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_004 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1251

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2AAR|1|0|C|133
2AAR|1|0|G|134
2AAR|1|0|U|135
2AAR|1|0|A|136
2AAR|1|0|A|137
2AAR|1|0|G|138

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23

Chain W

50S ribosomal protein L29