HL_2AAR_005

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

2AAR|1|0|C|148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_005 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3186

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

2AAR|1|0|C|146
2AAR|1|0|G|147
2AAR|1|0|C|148
2AAR|1|0|A|149
2AAR|1|0|A|150
2AAR|1|0|G|151

Current chains

Chain 0

23S ribosomal RNA

Nearby chains