HL_2AAR_006

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

2AAR|1|0|A|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.3243

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

2AAR|1|0|G|171
2AAR|1|0|A|172
2AAR|1|0|A|173
2AAR|1|0|A|174
2AAR|1|0|C|175
2AAR|1|0|A|176
2AAR|1|0|U|177
2AAR|1|0|C|178

Current chains

Chain 0

23S ribosomal RNA

Nearby chains