HL_2AAR_012

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

2AAR|1|0|G|399, 2AAR|1|0|U|400, 2AAR|1|0|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.2741

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

2AAR|1|0|G|395
2AAR|1|0|U|396
2AAR|1|0|U|397
2AAR|1|0|C|398
2AAR|1|0|G|399
2AAR|1|0|U|400
2AAR|1|0|G|401
2AAR|1|0|A|402
2AAR|1|0|A|403
2AAR|1|0|A|404
2AAR|1|0|C|405

Current chains

Chain 0

23S ribosomal RNA

Nearby chains