HL_2AAR_017

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

2AAR|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_017 not in the Motif Atlas

Geometric match to HL_7A0S_018

Geometric discrepancy: 0.1463

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

2AAR|1|0|U|575
2AAR|1|0|A|576
2AAR|1|0|U|577
2AAR|1|0|U|578
2AAR|1|0|G|579
2AAR|1|0|A|580
2AAR|1|0|A|581
2AAR|1|0|G|582
2AAR|1|0|C|583
2AAR|1|0|A|584

Current chains

Chain 0

23S ribosomal RNA

Nearby chains