HL_2AAR_035

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

2AAR|1|0|U|1409, 2AAR|1|0|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_035 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3034

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2AAR|1|0|G|1402
2AAR|1|0|U|1403
2AAR|1|0|C|1404
2AAR|1|0|A|1405
2AAR|1|0|A|1406
2AAR|1|0|G|1407
2AAR|1|0|A|1408
2AAR|1|0|U|1409
2AAR|1|0|U|1410
2AAR|1|0|C|1411

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 7

Trigger Factor

Chain R

50S ribosomal protein L23