HL_2AAR_036

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAUGGCUAUG

Length

11 nucleotides

Bulged bases

2AAR|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_036 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.2297

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2AAR|1|0|C|1466
2AAR|1|0|U|1467
2AAR|1|0|A|1468
2AAR|1|0|U|1469
2AAR|1|0|G|1470
2AAR|1|0|G|1471
2AAR|1|0|C|1472
2AAR|1|0|U|1473
2AAR|1|0|A|1474
2AAR|1|0|U|1475
2AAR|1|0|G|1476

Current chains

Chain 0

23S ribosomal RNA

Nearby chains