HL_2AAR_037

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAAUC

Length

7 nucleotides

Bulged bases

2AAR|1|0|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_037 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.4858

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

2AAR|1|0|G|1508
2AAR|1|0|A|1509
2AAR|1|0|A|1510
2AAR|1|0|A|1511
2AAR|1|0|A|1512
2AAR|1|0|U|1513
2AAR|1|0|C|1514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains