HL_2AAR_055

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGACACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_055 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.1157

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

2AAR|1|0|C|2334
2AAR|1|0|U|2335
2AAR|1|0|G|2336
2AAR|1|0|A|2337
2AAR|1|0|C|2338
2AAR|1|0|A|2339
2AAR|1|0|C|2340
2AAR|1|0|G|2341

Current chains

Chain 0

23S ribosomal RNA

Nearby chains