HL_2ANN_001

3D structure

PDB id

2ANN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure (I) of Nova-1 KH1/KH2 domain tandem with 25 nt RNA hairpin

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGGAUCAGUCACCCAAG

Length

17 nucleotides

Bulged bases (A, C, G, U)

12G, 13U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.8

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

2ANN|1|B|C|5
2ANN|1|B|G|6
2ANN|1|B|G|7
2ANN|1|B|A|8
2ANN|1|B|U|9
2ANN|1|B|C|10
2ANN|1|B|A|11
2ANN|1|B|G|12
2ANN|1|B|U|13
2ANN|1|B|C|14
2ANN|1|B|A|15
2ANN|1|B|C|16
2ANN|1|B|C|17
2ANN|1|B|C|18
2ANN|1|B|A|19
2ANN|1|B|A|20
2ANN|1|B|G|21

Current chains

Chain B

5'-R(*CP*GP*CP*GP*CP*GP*GP*AP*UP*CP*AP*GP*UP*CP*AP*CP*CP*CP*AP*AP*GP*CP*GP*CP*G)-3'

Nearby chains

Chain A

neuro-oncological ventral antigen 1