Motif HL_89498.1 Version HL_89498.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 4-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_234 | 8P9A | 0.0000 | 6 | sR | SSU rRNA | G | 486 | G | 488 | C | 490 | C | 491 | G | 496 | G | 497 | G | 498 | U | 499 | C | 500 | U | 501 | ncWWa | ncSW | ncWS | |
| 2 | HL_2ANN_001 | 2ANN | 0.8829 | 7 | B | RNA (25-mer) | C | 5 | G | 7 | U | 9 | C | 10 | C | 16 | C | 17 | C | 18 | A | 19 | A | 20 | G | 21 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGCCCAUUCGGGUCU | 1 |
| CGGAUCAGUCACCCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCCCAUUCGGGUC | 1 |
| GGAUCAGUCACCCAA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.88 | Avg 0.44 | Max 0.88
Coloring options: