HL_2AP0_010

3D structure

PDB id

2AP0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, 20 Lowest Energy Structures

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

G(CH)GCCGAC

Length

8 nucleotides

Bulged bases

2AP0|10|A|G|9, 2AP0|10|A|A|13

QA status

Modified nucleotides: CH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AP0_010 not in the Motif Atlas

Geometric match to HL_5J7L_014

Geometric discrepancy: 0.2936

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2AP0|10|A|G|7
2AP0|10|A|CH|8
2AP0|10|A|G|9
2AP0|10|A|C|10
2AP0|10|A|C|11
2AP0|10|A|G|12
2AP0|10|A|A|13
2AP0|10|A|C|14

Current chains

Chain A

C27A Sugarcane Yellow Leaf Virus RNA pseudoknot

Nearby chains