HL_2B3J_004

3D structure

PDB id

2B3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

ACU(P5P)CGGAU

Length

9 nucleotides

Bulged bases

2B3J|1|H|U|33, 2B3J|1|H|C|35, 2B3J|1|H|G|37

QA status

Modified nucleotides: P5P

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2B3J_004 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.3102

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

2B3J|1|H|A|31
2B3J|1|H|C|32
2B3J|1|H|U|33
2B3J|1|H|P5P|34
2B3J|1|H|C|35
2B3J|1|H|G|36
2B3J|1|H|G|37
2B3J|1|H|A|38
2B3J|1|H|U|39

Current chains

Chain H

anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)

Nearby chains

Chain C

tRNA adenosine deaminase

Chain D

tRNA adenosine deaminase

Chain F

anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)