HL_2BU1_001

3D structure

PDB id

2BU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MS2-RNA HAIRPIN (5BRU -5) COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GAU(5BU)AC

Length

6 nucleotides

Bulged bases

2BU1|1|R|U|10||||P_1, 2BU1|1|R|A|12||||P_1

QA status

Modified nucleotides: 5BU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2BU1_001 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.151

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2BU1|1|R|G|8||||P_1
2BU1|1|R|A|9||||P_1
2BU1|1|R|U|10||||P_1
2BU1|1|R|5BU|11||||P_1
2BU1|1|R|A|12||||P_1
2BU1|1|R|C|13||||P_1

Current chains

Chain R

5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'

Nearby chains

Chain A

MS2 COAT PROTEIN

Chain B

MS2 COAT PROTEIN

Chain C

MS2 COAT PROTEIN