HL_2D1B_001
3D structure
- PDB id
- 2D1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Solution RNA structure model of the HIV-1 dimerization initiation site in the kissing-loop dimer
- Experimental method
- SOLUTION NMR
- Resolution
Loop
- Sequence
- GAAGUGCACAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2D1B_001 not in the Motif Atlas
- Geometric match to HL_4PJO_001
- Geometric discrepancy: 0.1218
- The information below is about HL_4PJO_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67407.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
2D1B|1|A|G|14
2D1B|1|A|A|15
2D1B|1|A|A|16
2D1B|1|A|G|17
2D1B|1|A|U|18
2D1B|1|A|G|19
2D1B|1|A|C|20
2D1B|1|A|A|21
2D1B|1|A|C|22
2D1B|1|A|A|23
2D1B|1|A|C|24
Current chains
- Chain A
- RNA
Nearby chains
- Chain B
- HIV-1 dimerisation initiation site; psi RNA packaging signal; retroviral psi packaging element
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