HL_2D3O_002
3D structure
- PDB id
- 2D3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUGGAGAUACG
- Length
- 11 nucleotides
- Bulged bases
- 2D3O|1|0|G|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2D3O_002 not in the Motif Atlas
- Homologous match to HL_7A0S_002
- Geometric discrepancy: 0.396
- The information below is about HL_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76590.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
2D3O|1|0|C|85
2D3O|1|0|U|86
2D3O|1|0|G|87
2D3O|1|0|G|88
2D3O|1|0|A|89
2D3O|1|0|G|90
2D3O|1|0|A|91
2D3O|1|0|U|92
2D3O|1|0|A|93
2D3O|1|0|C|94
2D3O|1|0|G|95
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain R
- 50S RIBOSOMAL PROTEIN L23
- Chain S
- 50S RIBOSOMAL PROTEIN L24
- Chain W
- 50S RIBOSOMAL PROTEIN L29
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