HL_2D3O_009

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

2D3O|1|0|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.208

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

2D3O|1|0|C|316
2D3O|1|0|U|317
2D3O|1|0|G|318
2D3O|1|0|G|319
2D3O|1|0|A|320
2D3O|1|0|A|321
2D3O|1|0|A|322
2D3O|1|0|G|323

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain S

50S RIBOSOMAL PROTEIN L24