HL_2D3O_011

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

2D3O|1|0|G|340, 2D3O|1|0|A|341, 2D3O|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.4084

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

2D3O|1|0|G|338
2D3O|1|0|U|339
2D3O|1|0|G|340
2D3O|1|0|A|341
2D3O|1|0|G|342
2D3O|1|0|A|343
2D3O|1|0|G|344
2D3O|1|0|U|345
2D3O|1|0|C|346

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain S

50S RIBOSOMAL PROTEIN L24