HL_2D3O_016

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

2D3O|1|0|U|554, 2D3O|1|0|U|555, 2D3O|1|0|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_016 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3575

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

2D3O|1|0|C|552
2D3O|1|0|C|553
2D3O|1|0|U|554
2D3O|1|0|U|555
2D3O|1|0|A|556
2D3O|1|0|U|557
2D3O|1|0|G|558
2D3O|1|0|C|559
2D3O|1|0|G|560

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains