HL_2D3O_022

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

2D3O|1|0|U|760, 2D3O|1|0|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_022 not in the Motif Atlas

Homologous match to HL_8VTW_022

Geometric discrepancy: 0.2559

The information below is about HL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

2D3O|1|0|U|757
2D3O|1|0|G|758
2D3O|1|0|C|759
2D3O|1|0|U|760
2D3O|1|0|G|761
2D3O|1|0|A|762
2D3O|1|0|A|763
2D3O|1|0|A|764
2D3O|1|0|C|765
2D3O|1|0|A|766

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains