HL_2D3O_023

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

2D3O|1|0|A|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_023 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2139

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

2D3O|1|0|G|791
2D3O|1|0|U|792
2D3O|1|0|G|793
2D3O|1|0|A|794
2D3O|1|0|A|795
2D3O|1|0|A|796
2D3O|1|0|A|797
2D3O|1|0|G|798
2D3O|1|0|C|799

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains