HL_2D3O_041

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UCAAUG

Length

6 nucleotides

Bulged bases

2D3O|1|0|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_041 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.1855

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

2D3O|1|0|U|1647
2D3O|1|0|C|1648
2D3O|1|0|A|1649
2D3O|1|0|A|1650
2D3O|1|0|U|1651
2D3O|1|0|G|1652

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains