HL_2D3O_045

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

2D3O|1|0|A|1771, 2D3O|1|0|C|1772, 2D3O|1|0|C|1773, 2D3O|1|0|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2866

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

2D3O|1|0|G|1767
2D3O|1|0|U|1768
2D3O|1|0|U|1769
2D3O|1|0|U|1770
2D3O|1|0|A|1771
2D3O|1|0|C|1772
2D3O|1|0|C|1773
2D3O|1|0|A|1774
2D3O|1|0|A|1775
2D3O|1|0|A|1776
2D3O|1|0|A|1777
2D3O|1|0|U|1778
2D3O|1|0|C|1779

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains