HL_2D3O_046

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

2D3O|1|0|A|1799, 2D3O|1|0|C|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_046 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.2246

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

2D3O|1|0|C|1797
2D3O|1|0|G|1798
2D3O|1|0|A|1799
2D3O|1|0|A|1800
2D3O|1|0|C|1801
2D3O|1|0|A|1802
2D3O|1|0|G|1803

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains