HL_2D3O_054

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

2D3O|1|0|A|2245, 2D3O|1|0|A|2247, 2D3O|1|0|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_054 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.5699

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

2D3O|1|0|C|2243
2D3O|1|0|C|2244
2D3O|1|0|A|2245
2D3O|1|0|A|2246
2D3O|1|0|A|2247
2D3O|1|0|A|2248
2D3O|1|0|U|2249
2D3O|1|0|G|2250
2D3O|1|0|U|2251
2D3O|1|0|A|2252
2D3O|1|0|A|2253
2D3O|1|0|C|2254
2D3O|1|0|G|2255

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains